Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Meis1

Cell type

Cell type Class
Neural
Cell type
Choroid Plexus
MeSH Description
A villous structure of tangled masses of BLOOD VESSELS contained within the third, lateral, and fourth ventricles of the BRAIN. It regulates part of the production and composition of CEREBROSPINAL FLUID.

Attributes by original data submitter

Sample

source_name
4th ventricle choroid plexus
strain
CD-1
chip antibody
Meis1 (abcam 19867)
genotype
wild type
tissue
4th ventricle choroid plexus

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tissue lysates were cross-linked, sonicated and isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the NEBNext DNA library preparation reagents (E6000).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
33278172
Reads aligned (%)
53.5
Duplicates removed (%)
13.6
Number of peaks
3518 (qval < 1E-05)

mm9

Number of total reads
33278172
Reads aligned (%)
53.4
Duplicates removed (%)
13.8
Number of peaks
3495 (qval < 1E-05)

Base call quality data from DBCLS SRA