Antigen

Antigen Class

TFs and others

Antigen

Meis1

Cell type

Cell type Class

Neural

Cell type

Choroid Plexus

MeSH Description

A villous structure of tangled masses of BLOOD VESSELS contained within the third, lateral, and fourth ventricles of the BRAIN. It regulates part of the production and composition of CEREBROSPINAL FLUID.

Sample

source_name

4th ventricle choroid plexus

strain

CD-1

chip antibody

Meis1 (abcam 19867)

genotype

wild type

tissue

4th ventricle choroid plexus

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Tissue lysates were cross-linked, sonicated and isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the NEBNext DNA library preparation reagents (E6000).

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

33278172

Reads aligned (%)

53.5

Duplicates removed (%)

13.6

Number of peaks

3518 (qval < 1E-05)

mm9

Number of total reads

33278172

Reads aligned (%)

53.4

Duplicates removed (%)

13.8

Number of peaks

3495 (qval < 1E-05)